Article
Author: Hughes, Bethany K. ; Schambach, Axel ; Flutter, Barry ; Nkemdirim, Jacob ; Braybrook, Toni ; Mhaldien, Lana ; Bye, Lilian ; Wozniak, Eva ; Pavasovic, Vesna ; Benjamin, Reuben ; Sauer, Martin ; Perez-Martinez, Antonio ; Rauthan, Archana ; Samarasinghe, Sujith ; Qasim, Waseem ; Chaudhury, Shahzya ; Stevens, Paul ; Gough, Oliver ; Jones, Benjamin ; Potter, Victoria ; Silva, Juliana ; Farhatullah, Syed ; O’Neill, Rebecca ; Kadirkamanathan, Renuka ; Clesham, Katherine ; Pinner, Danielle ; Oporto Espuelas, Macarena ; Falade, Funmi ; Rao, Anupama ; Cavanagh, Sophie ; Prasad, Sandeep ; Ko, Ka-Yuk ; Patel, Hamza ; Norton, Alice ; Ancliff, Phillip ; Rao, Kanchan ; Hua, Cheryl ; Kloos, Arnold ; O’Connor, David ; Chan, Carolyn ; Selvage, Jemma ; Ahmed, Batoul ; Crosby, Catherine ; Rashed, Hebatalla ; Heuser, Michael ; Kubat, Agnieszka ; James, Jesmina ; Hughes, Samantha ; Cheng, Danny ; Rao, Harini ; Veys, Paul ; Mullanfiroze, Khushnuma ; Etuk, Annie ; Martins, Katrina ; Nastasi, Laura ; Chiesa, Robert ; Thomas, Rebecca ; Joshi, Akshay ; Schena, Ilaria ; Mein, Chaz ; Ancliff, Philip ; Balasch Carulla, Milena ; Preece, Roland ; Zhan, Hong ; Grasso, Antonio ; Gilmour, Kimberly ; Naidoo, Gitanya ; Chu, Jan ; Georgiadis, Christos ; Boot, James ; Rivers, Elizabeth ; Adams, Stuart ; Bartram, Jack ; Domning, Sabine ; Lazareva, Arina ; Mishra, Avijeet
Chimeric antigen receptor (CAR) T cell therapy for acute myeloid leukemia (AML) is constrained by antigen heterogeneity and shared expression with healthy compartments, and there are often challenges in obtaining autologous T cells from heavily pretreated patients. To address these challenges, we developed universal donor-derived, base-edited, anti-CD33 CAR T cells (BE-CAR33) that used precise multiplexed cytidine deamination to simultaneously disrupt the
TRAC
,
CD52
, and
CD7
loci to prevent graft-versus-host disease and evade immunotherapy effects. An open-label, nonrandomized, single-center phase 1 study (ISRCTN14430213) evaluated the safety, feasibility, and activity of BE-CAR33 cell therapy ahead of allogeneic stem cell transplantation (allo-SCT) for patients with AML. Eligible participants were aged less than 16 years with relapsed/refractory AML. Five patients were screened, and three were enrolled; one additional adult received BE-CAR33 through compassionate access. Participants received fludarabine, cyclophosphamide, and alemtuzumab followed by 1.2 to 1.8 × 10
6
BE-CAR33 cells per kilogram. Treatment-emergent adverse events included cytokine release syndrome (grade ≤2), neurotoxicity (grade 3), cytopenias (grade 4), and transient rashes. Two patients demonstrated reduced minimal residual disease and proceeded to allo-SCT. Serial flow cytometry, chimerism quantification, and vector copy number analyses tracked BE-CAR33 T cells until elimination during transplant. Differentially expressed genes included editing signatures and switched from manufacturing-related toward postexpansion effector and exhaustion profiles. Although primary end points were not met, this first-in-human study demonstrated the feasibility of an “off-the-shelf” base-edited CAR T cell approach and informs future multiantigen strategies against AML.