Article
Author: Ruella, Marco ; Plesa, Gabriela ; Jarocha, Danuta ; Michener, Peter ; Alkhatib, Mohannad H ; Chen, Gregory M ; Napier, Ellen B ; Stella, Federico ; Porazzi, Patrizia ; Chong, Elise A ; Chong, Emeline R ; Nasta, Sunita D ; Jadlowsky, Julie ; Fraietta, Joseph A ; Svoboda, Jakub ; Xu, Rong ; Mackey, Shane ; Carturan, Alberto ; Guruprasad, Puneeth ; Landsburg, Daniel J ; Dai, Anlan ; de Souza, Vitor B ; Schuster, Stephen J ; Levine, Bruce L ; June, Carl H ; Patel, Vrutti ; Gonzalez, Vanessa E ; Ramasubramanian, Ranjani ; Porter, David L ; Imparato, Antonio ; Siegel, Don L ; Frey, Noelle ; Zheng, Zhixuan ; Das, Priyamvada ; Bushman, Frederic D ; Paruzzo, Luca ; Ho, Matthew
Abstract:
Chimeric antigen receptor (CAR) T cell therapy induces durable remissions in lymphoid malignancies, yet the extent and biology of long-term CAR T cell persistence in B cell lymphoma remain unclear. Here we report the persistence and characteristics of 4-1BB-costimulated anti-CD19 CAR T cells (CART19) up to 10 years after infusion in 38 patients with non-Hodgkin lymphoma. Beyond year five, the
CAR19
transgene was detectable in five of eight long-term responders (7.0–10.1 years), with three patients maintaining B cell aplasia, which is consistent with sustained functional activity. In one patient with a progression-free survival of 10.1 years, CART19 cells comprised 1.2% of circulating T cells 9.3 years after infusion. Long-term persisting CART19 cells exhibited a predominant double-negative (CD4
−
CD8
−
), effector-memory-like phenotype associated with increased aerobic metabolism and T cell activation programs. Longitudinal profiling revealed a progressive transition from CD8
+
to double-negative CAR T cells over time. Persisting CART19 shared transcriptional features with long-term CAR T cells described in acute and chronic leukemias. T cell receptor sequencing demonstrated oligoclonal persistence at 9.3 years, with a dominant clone (70% of CART19 cells) already detectable at low frequency (<0.1%) at day 14. Lentiviral integration-site analysis identified a predominant integration within PACS1 without evidence of known drivers of CAR T cell expansion. These findings demonstrate that CART19 cells can persist for more than 10 years in lymphoma and identify phenotypic, transcriptional and clonal features associated with exceptionally long-term persistence. ClinicalTrials.gov registration:
NCT02030834