Leishmaniasis is a neglected tropical disease caused by Leishmania parasites and is associated with more than 1.3 million cases annually. The current therapeutic options include pentavalent antimonials, miltefosine, and amphotericin B, but their use is limited because of high toxicity, declining efficacy due to drug resistance, high treatment costs, and the absence of rationally designed, target-based antileishmanial therapies. This critical gap necessitates the discovery of novel, safe, and effective anti-leishmanial agents. In the present study, an E-Pharmacophore-based screening strategy was employed to identify pharmacological alternatives for treating leishmaniasis through a drug repurposing approach. A comprehensive in silico screening of clinically approved molecules was conducted against Leishmania major methionyl-tRNA synthetase (LmMetRS; PDB ID: 6SWX), an essential enzyme in parasite protein biosynthesis and a validated, selective molecular target for antileishmanial drug discovery. Potential hit molecules were identified by pharmacophore-based screening, molecular docking, and molecular dynamics simulations. The virtual screening identified four promising hits: Bofutrelvir, Rebamipide, Selumitinib, and Carvedilol. Additionally, post-simulation and density functional theory (DFT) analysis were performed to evaluate the electronic characteristics of the top two hits (Bofutrelvir, Selumitinib). These candidates demonstrated superior binding interactions within the LmMetRS allosteric site, stable protein-ligand complexes, supporting their therapeutic potential. These findings provide a strong foundation for drug repurposing and highlight these compounds as potential anti-leishmanial agents. Further biological validation is warranted to validate their anti-leishmanial efficacy.