A quality control method for the determination of related substances in 5-fluorocytosine API was established.The related substances in 5-fluorocytosine API were determined by HPLC.The specificity, precision, accuracy, linearity range and robustness of the method were validated.The linear relationship was good in the range of 0.02 ∼ 0.12 μg/mL with the correlation coefficient greater than 0.999, the limit of detection was 0.007 0 μg/mL, the limit of quantification was 0.02 μg/mL, the average recovery was 97.76%∼97.87%, the RSD of repeatability was 0.02%, and the results of robustness test were within the specified limits.The method can effectively determine the related substances in fluorocytosine API.